PPolySim OS
For K-12 Students · Phylogenetic Distance

Phylogenetic Distance for a virus spread

Built for k-12 students learning it in middle or high school. Watch the idea come alive with plain-language steps and everyday examples — perfect for projects and homework. Simulate a virus spread live below — adjust the inputs and watch it respond, right in your browser.

Phylogenetic DistanceLive
Seq A: ...ACGTACGTTACG...
Seq ASeq B
Seq B: ...ACGTGCGTCACG...

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The more two DNA sequences differ, the longer ago they shared an ancestor. But raw differences undercount, because a site can mutate more than once. The Jukes–Cantor correction inflates the raw distance to estimate the true number of substitutions per site. Educational tool.

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Data Inspector

Percent identity85.0%
Raw distance p0.150
Jukes–Cantor distance0.167
Est. divergence17 (relative)

Governing equation

Reading this result: About 15.0% of sites differ, and the Jukes–Cantor correction inflates that to 0.167 substitutions per site to account for hidden multiple hits.

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Frequently asked questions

Is this good for k-12 students?
Yes — this version of "Phylogenetic Distance for a virus spread" is framed for k-12 students learning it in middle or high school. Watch the idea come alive with plain-language steps and everyday examples — perfect for projects and homework.
Do I need to install anything?
No. It runs in any modern browser, free, with no account required.